University of Missouri

Computational RNA Biophysics



Welcome to the Chen lab! Our research focuses on developing computational methods to predict structural and dynamical processes in RNA biophysical systems. To tackle the immense conformational sampling space and complex interactions inherent in these systems, we harness cutting-edge machine learning, equilibrium and nonequilibrium statistical mechanics, biophysical theories, and state-of-the-art simulation techniques such as molecular dynamics and Monte Carlo methods. Our work goes beyond traditional approaches by creating novel hybrid physics- and data-driven solutions for RNA structure and interaction predictions and therapeutic applications. The methods we develop are accelerating discoveries in RNA biology and making contributions to the development of next-generation therapeutics.





Research Interests

RNA 2D structure folding

We develop physics-based 2D models to predict RNA structure and folding thermodynamics from the sequence.



RNA 3D structure folding

We develop computational tools to predict all-atom 3D structures of RNA from the sequence.


RNA-ligand docking

We conduct RNA-ligand docking researches which can be crucial in selecting small molecules as drug candidates.


CRISPR-Cas9 system


We develop mechanistic models to investigate CRISPR-Cas9 gene editing.


RNA-Deep learning


We use deep learning methods to predict RNA-metal ion interactions