University of Missouri
Computational RNA Biophysics
- Vfold2D : Predicting RNA 2D structure from sequence (1M NaCl)
- VfoldMCPX : Predicting 2D structures of RNA duplex and multi-strand RNA complexes (1M NaCl)
- Vfold Pipeline : Predicting RNA 3D structure from 2D structure/sequence (1M NaCl)
- IsRNA : 3D structure prediction using coarse-grained molecular dynamics simulation
- RLDOCK : A physics-based model for RNA-ligand docking
- SPRank : A hybrid machine-learning and knowledge-based scoring function for RNA-ligand docking and binding affinity prediction
- uCRISPR : A folding thermodynamics-based prediction for CRISPR/Cas9 cleavage efficiency
- MgNet : Identifying metal ion binding sites on RNA using 3D convolutional neural network.